Skip to main content

Table 1 Total number of fragments produced by in silico digestion of 23 species

From: Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants

Species SbfI + EcoRI SbfI + MlucI NlaIII + MlucI AvaII + MspI EcoRI + MspI PstI + MspI
Brassica rapa 2352 2795 3,710,380 271,860 88,220 70,512
Glycine max 7498 9006 16,747,131 803,332 306,391 162,398
Populus trichocarpa 4876 5769 7,169,615 329,150 147,647 97,378
Vitis vinifera 4994 5903 8,028,433 380,967 162,506 91,994
Brachypodium distachyon 12,306 14,912 3,237,571 535,195 106,924 166,584
Carica papaya 4592 5255 4,221,765 245,762 99,163 59,272
Physcomitrella patens 4786 5413 7,434,539 329,065 144,069 102,802
Cucumis sativus 1450 1737 3,342,214 116,754 62,340 32,319
Musa acuminata 6599 7483 5,467,255 433,922 170,591 129,105
Nelumbo nucifera 9469 10,906 10,160,790 944,853 308,661 164,996
Theobroma cacao 3376 3979 6,027,724 226,779 114,082 80,088
Phoenix dactylifera 8978 10,334 7,341,396 716,454 218,488 177,248
Amborella trichopoda 11,702 13,558 10,008,594 787,796 234,856 120,412
Beta vulgaris 6458 7804 7,904,182 483,300 199,616 103,224
Sesamum indicum 3412 4135 4,915,092 247,403 113,511 78,634
Eucalyptus grandis 8364 9943 9,894,486 849,552 307,001 174,810
Prunus persica 3116 4351 3,505,137 237,185 90,631 67,280
Solanum lycopersicum 15,086 18,005 12,249,900 596,412 255,692 124,564
Oryza sativa 10,042 11,855 4,881,316 595,046 138,534 171,045
Phyllostachys edulis 51,097 58,916 23,112,695 3,233,281 734,959 707,912
Sorghum bicolor 21,528 23,978 8,200,062 1,217,504 301,472 329,922
Setaria italica 15,347 17,861 4,683,693 757,165 145,882 225,478
Zea mays 85,902 2797 21,096,385 4,784,940 807,008 886,527