Table 3 Results using AGI search for AT5G60690
From: LEAFDATA: a literature-curated database for Arabidopsis leaf development
Phenotype |
PubMed ID: 10353913 Berná G, Robles P, Micol JL—A mutational analysis of leaf morphogenesis in Arabidopsis thaliana rev … displaying large … rosette … leaves |
PubMed ID: 16284709 Horiguchi G, Ferjani A, Fujikura U, Tsukaya H—Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thaliana known large-leaf mutants … rev |
PubMed ID: 20807212 Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis the 35S::REV Arabidopsis plant displayed an upwardly curled leaf phenotype (Mallory et al. 2004) |
PubMed ID: 22003085 Wang W, Xu B, Wang H, Li J, Huang H, Xu L—YUCCA genes are expressed in response to leaf adaxial-abaxial juxtaposition and are required for leaf margin development as2-1 rev-1 … there were many more margin cell patches than in the wild type as2-1 rev-1 yuc1 yuc2 yuc4 … The margin formation … was severely defective as2-1 rev-1 … leaves … had fewer hydathodes than the wild type leaves of … as2-1 rev-1 … were smaller than fully expanded leaves of the wild type finger-shaped protrusions … were observed on the adaxial side of late-appearing leaves of as2-1 rev-1 as2-1 rev-1 … cell patches … could occur anywhere among the margin cells The rosette leaves of one as2-1 rev-1 yuc1 yuc2 yuc4 plant … leaf margin curled upward as2-1 rev-1 yuc1 yuc2 yuc4 … leaves, which were filamentous treatment with increased NPA concentrations resulted in decreased plant size of as2-1 rev-1 as2-1 rev-1 … had lobes on their rosette leaves Compared with the as2-1 rev-1 double mutant … as2-1 rev-1 yuc1 yuc2 yuc4/+ plants were reduced in size The rosette leaves of one as2-1 rev-1 yuc1 yuc2 yuc4 plant … were narrow as2-1 rev-1 yuc1 yuc2 yuc4 … lacking typical margin cells |
PubMed ID: 7555701 Talbert PB, Adler HT, Parks DW, Comai L—The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana leaves of rev-1 mutants grew abnormally large The rosette leaves of rev-1 plants were not readily distinguishable from wild-type No-0 leaves prior to bolting. As bolting began, however, the youngest rosette leaves became abnormally large … as they matured The rev-1 mutation caused overgrowth of both rosette and cauline leaves The rosette leaves of rev-1 plants were not readily distinguishable from wild-type No-0 leaves prior to bolting. As bolting began, however, the youngest rosette leaves became … distorted or uneven in shape as they matured mutants with a syndrome con- sisting of revolute (downwardly curled) leaves … rev-1, rev-2 and rev-4 Both the leaves and the primary shoots of rev-1 mutants were often darker green than those of wild type The difference in leaf size between wild-type and rev-1 plants was not obvious in the earlier rosette leaves, but we measured significant size differences in the cotyledons and first and third leaves from cohort 3 (Table 2). Later leaves differed more dramatically: the mean length of the longest rosette leaf (ordinarily the youngest leaf) of rev-1 plants was about 39 % longer than wild-type controls, and rev-1 cauline leaves became up to twice as long as their wild-type counterparts |
Gene expression |
PubMed ID: 11525739 Eshed Y, Baum SF, Perea JV, Bowman JL—Establishment of polarity in lateral organs of plants mRNA of REV … Later expression is confined to the provascular and vascular tissues of leaves mRNA of REV … restricted to the adaxial domain as developing primordia REV … initiates normally in kan1 kan2 leaf primordia mRNA of REV … is localized to the SAM REV … in kan1 kan2 leaf primordia … confinement to the adaxial domain is delayed mRNA of REV … is localized to the SAM, throughout leaf primordia anlagen |
PubMed ID: 12615938 Nelissen H, Clarke JH, De Block M, De Block S, Vanderhaeghen R, Zielinski RE, Dyer T, Lust S, Inzé D, Van Lijsebettens M—DRL1, a homolog of the yeast TOT4/KTI12 protein, has a function in meristem activity and organ growth in plants pREV(OLUTA)-GUS … were introgressed into drl1-2 … marker lines displayed promoter activity in the dorsal part of the leaf primordium, including the vascular bundles |
PubMed ID: 16682355 Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway REVOLUTA … Expression is re- stricted to the adaxial domain |
PubMed ID: 16699177 Xu L, Yang L, Pi L, Liu Q, Ling Q, Wang H, Poethig RS, Huang H—Genetic interaction between the AS1-AS2 and RDR6-SGS3-AGO7 pathways for leaf morphogenesis leaves of the sgs3-11 as2-101 … contained … reduced levels of REV transcripts REV transcripts were detected in the earlier stage leaf primordia in … zip as1-101 leaves of the … zip as2-101 … contained … reduced levels of REV transcripts REV … repressed … in the rdr6-3 as2-101 leaves REV transcripts were detected in the earlier stage leaf primordia in … sgs3-11 as2-101 rdr6-3 as2-101 … leaves … contained … reduced levels of REV transcripts REV transcripts were detected in the earlier stage leaf primordia in … zip as2-101 REV transcripts were detected in the earlier stage leaf primordia in sgs3-11 as1-101 |
PubMed ID: 17559509 Iwakawa H, Iwasaki M, Kojima S, Ueno Y, Soma T, Tanaka H, Semiarti E, Machida Y, Machida C—Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves in as2-1 … No significant differences in levels of transcripts were detected for … REV in as1-1 … No significant differences in levels of transcripts were detected for … REV |
PubMed ID: 19717616 Vandenbussche M, Horstman A, Zethof J, Koes R, Rijpkema AS, Gerats T—Differential recruitment of WOX transcription factors for lateral development and organ fusion in Petunia and Arabidopsis In Arabidopsis, organ polarity regulation has been characterized extensively at the molecular level. We therefore have monitored the expression levels of a selection of Arabidopsis genes known to be involved in abaxial/adaxial patterning. The selection of genes comprises … REVOLUTA … None of the monitored Arabidopsis genes exhibited significant changes in transcript levels between wox1 prs mutant samples and the wild type |
PubMed ID: 20628155 Sarojam R, Sappl PG, Goldshmidt A, Efroni I, Floyd SK, Eshed Y, Bowman JL—Differentiating Arabidopsis shoots from leaves by combined YABBY activities YABBY triple mutants display reduced expression of … REV |
PubMed ID: 20807212 Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis REV and ATHB-15 trans-cripts were strongly enhanced in Dof5.1-D (Figure 6a); however, ATHB-15 was not increased in DEX::Dof5.1 plants upon DEX treatment whereas REV transcript was enhanced (Figure 6b). Increased expression of ATHB-15 in Dof5.1-D is probably due to a secondary effect REV expression was decreased in 35S::Dof5.1ΔAct plants although the levels were different depending on transgenic lines |
PubMed ID: 21223391 Szakonyi D, Byrne ME—Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana REV:REV-VENUS … expressed in the apical and central regions of wild-type embryos |
PubMed ID: 21251100 Horiguchi G, Mollá-Morales A, Pérez-Pérez JM, Kojima K, Robles P, Ponce MR, Micol JL, Tsukaya H—Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development agreement with the synergistic polarity defects observed in rpl4d-3 as2-1 … expression … REV were expressed at similar levels in the … parents |
PubMed ID: 22003085 Wang W, Xu B, Wang H, Li J, Huang H, Xu L—YUCCA genes are expressed in response to leaf adaxial-abaxial juxtaposition and are required for leaf margin development pDR5::GUS … staining in the as2-1 rev-1 … leaves was also concentrated in the top portion of the protrusions YUC4 was expressed in the leaf protrusions of the mock-treated as2-1 rev-1 as2-1 rev-1 … when … treated with 1 μM NPA … we did not observe the small GUS-staining spots on leaf surfaces as2-1 rev-1 … expressions of … YUC4 … associated with the protrusions on leaves as2-1 rev-1 … expressions of YUC1 … associated with the protrusions on leaves as2-1 rev-1 … expressions of … YUC2 … associated with the protrusions on leaves |
PubMed ID: 22026817 Xu D, Huang W, Li Y, Wang H, Huang H, Cui X—Elongator complex is critical for cell cycle progression and leaf patterning in Arabidopsis We next examined expression of leaf polarity marker genes REVOLUTA (REV) and FILAMENTOUS FLOWER (FIL) in the elo2 as2 background. rev-9 is a T-DNA enhancer trap line in which β-glucuronidase (GUS) staining represents the expression of the leaf adaxial marker REV (Emery et al. 2003; Hawker and Bowman 2004). Compared with that in the rev-9/+ plant (Fig. 1q), GUS staining was not detected from needle-like leaves of the elo2 as2 rev-9/+ plant |
PubMed ID: 23268445 Ben Chaabane S, Liu R, Chinnusamy V, Kwon Y, Park JH, Kim SY, Zhu JK, Yang SW, Lee BH.—STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis Compared with WT, the accumulation of … REV transcripts was higher in sta1-1, which is linked to decreased miR164/166 levels and explains the serrated leaf phenotype of sta1-1 |
PubMed ID: 24464295 Huang T, Harrar Y, Lin C, Reinhart B, Newell NR, Talavera-Rauh F, Hokin SA, Barton MK, Kerstetter RA—Arabidopsis KANADI1 acts as a transcriptional repressor by interacting with a specific cis-element and regulates auxin biosynthesis, transport, and signaling in opposition to HD-ZIPIII factors we found evidence for regulation by … GR-REV of … At5g47800 A third technique, qRT-PCR, on independent samples confirmed statistically significant upregulation of NPY1 by GR-REV in the presence and absence of CHX, indicating that NPY1 is likely a direct target of REV activation qRT-PCR on an independent set of samples showed upregulation of WAG1 by GR-REV both in the presence and absence of CHX we found evidence for regulation by … GR-REV of … ARF3 we found evidence for regulation by … GR-REV of … LAX3 we found evidence for regulation by … GR-REV of … YUCCA5 we found evidence for regulation by … GR-REV of … LAX1 we found evidence for regulation by … GR-REV of … At1g50280 we found evidence for regulation by … GR-REV of … LAX2 we found evidence for regulation by … GR-REV of … TAA1 we found evidence for regulation by … GR-REV of … ENP1/NPY1 ARF3/ETTIN showed reproducible upregulation by GR-REV we found evidence for regulation by … GR-REV of … At1g52770 |
DNA–protein interaction |
PubMed ID: 20807212 Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis The results from both in vitro and in vivo binding assays demonstrate that Dof5.1 directly binds to the REV promoter The EMSA result showed that, GST alone did not bind to the 89-bp long substrate (Figure 6d left, lane 2) but the GST–Dof5.1DB fusion protein migrated with promoter DNA |
Genetic interaction |
PubMed ID: 20807212 Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis The resulting Dof5.1-D/rev plants lacked the upward-curling phenotype of Dof5.1-D, thereby displaying almost WT morphology |
PubMed ID: 22003085 Wang W, Xu B, Wang H, Li J, Huang H, Xu L—YUCCA genes are expressed in response to leaf adaxial-abaxial juxtaposition and are required for leaf margin development leaves … as2-1 rev-1 … were smaller than … those of the corresponding single mutants |
Process |
PubMed ID: 16682355 Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway REVOLUTA … specifying adaxial identity |
Regulation of gene expression |
PubMed ID: 16682355 Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway The microRNA miR165, which regulates class III HD- ZIP gene expression through transcript cleavage REVOLUTA … Expression is re- stricted … by KANADI (KAN) genes |
PubMed ID: 20807212 Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis These results strongly indicate that Dof5.1 activates REV transcription |
PubMed ID: 24464295 Huang T, Harrar Y, Lin C, Reinhart B, Newell NR, Talavera-Rauh F, Hokin SA, Barton MK, Kerstetter RA—Arabidopsis KANADI1 acts as a transcriptional repressor by interacting with a specific cis-element and regulates auxin biosynthesis, transport, and signaling in opposition to HD-ZIPIII factors REV increases transcription, most likely by direct activation, of NPY1 |
Regulation of phenotype |
PubMed ID: 16682355 Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway REVOLUTA, influence leaf shape |