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Table 3 Results using AGI search for AT5G60690

From: LEAFDATA: a literature-curated database for Arabidopsis leaf development

Phenotype
PubMed ID: 10353913
Berná G, Robles P, Micol JL—A mutational analysis of leaf morphogenesis in Arabidopsis thaliana
 rev … displaying large … rosette … leaves
PubMed ID: 16284709
Horiguchi G, Ferjani A, Fujikura U, Tsukaya H—Coordination of cell proliferation and cell expansion in the control of leaf size in Arabidopsis thaliana
 known large-leaf mutants … rev
PubMed ID: 20807212
Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis
 the 35S::REV Arabidopsis plant displayed an upwardly curled leaf phenotype (Mallory et al. 2004)
PubMed ID: 22003085
Wang W, Xu B, Wang H, Li J, Huang H, Xu L—YUCCA genes are expressed in response to leaf adaxial-abaxial juxtaposition and are required for leaf margin development
 as2-1 rev-1 … there were many more margin cell patches than in the wild type
 as2-1 rev-1 yuc1 yuc2 yuc4 … The margin formation … was severely defective
 as2-1 rev-1 … leaves … had fewer hydathodes than the wild type
 leaves of … as2-1 rev-1 … were smaller than fully expanded leaves of the wild type
 finger-shaped protrusions … were observed on the adaxial side of late-appearing leaves of as2-1 rev-1
 as2-1 rev-1 … cell patches … could occur anywhere among the margin cells
 The rosette leaves of one as2-1 rev-1 yuc1 yuc2 yuc4 plant … leaf margin curled upward
 as2-1 rev-1 yuc1 yuc2 yuc4 … leaves, which were filamentous
 treatment with increased NPA concentrations resulted in decreased plant size of as2-1 rev-1
 as2-1 rev-1 … had lobes on their rosette leaves
 Compared with the as2-1 rev-1 double mutant … as2-1 rev-1 yuc1 yuc2 yuc4/+ plants were reduced in size
 The rosette leaves of one as2-1 rev-1 yuc1 yuc2 yuc4 plant … were narrow
 as2-1 rev-1 yuc1 yuc2 yuc4 … lacking typical margin cells
PubMed ID: 7555701
Talbert PB, Adler HT, Parks DW, Comai L—The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana
 leaves of rev-1 mutants grew abnormally large
 The rosette leaves of rev-1 plants were not readily distinguishable from wild-type No-0 leaves prior to bolting. As bolting began, however, the youngest rosette leaves became abnormally large … as they matured
 The rev-1 mutation caused overgrowth of both rosette and cauline leaves
 The rosette leaves of rev-1 plants were not readily distinguishable from wild-type No-0 leaves prior to bolting. As bolting began, however, the youngest rosette leaves became … distorted or uneven in shape as they matured
 mutants with a syndrome con- sisting of revolute (downwardly curled) leaves … rev-1, rev-2 and rev-4
 Both the leaves and the primary shoots of rev-1 mutants were often darker green than those of wild type
 The difference in leaf size between wild-type and rev-1 plants was not obvious in the earlier rosette leaves, but we measured significant size differences in the cotyledons and first and third leaves from cohort 3 (Table 2). Later leaves differed more dramatically: the mean length of the longest rosette leaf (ordinarily the youngest leaf) of rev-1 plants was about 39 % longer than wild-type controls, and rev-1 cauline leaves became up to twice as long as their wild-type counterparts
Gene expression
PubMed ID: 11525739
Eshed Y, Baum SF, Perea JV, Bowman JL—Establishment of polarity in lateral organs of plants
 mRNA of REV … Later expression is confined to the provascular and vascular tissues of leaves
 mRNA of REV … restricted to the adaxial domain as developing primordia
 REV … initiates normally in kan1 kan2 leaf primordia
 mRNA of REV … is localized to the SAM
 REV … in kan1 kan2 leaf primordia … confinement to the adaxial domain is delayed
 mRNA of REV … is localized to the SAM, throughout leaf primordia anlagen
PubMed ID: 12615938
Nelissen H, Clarke JH, De Block M, De Block S, Vanderhaeghen R, Zielinski RE, Dyer T, Lust S, Inzé D, Van Lijsebettens M—DRL1, a homolog of the yeast TOT4/KTI12 protein, has a function in meristem activity and organ growth in plants
 pREV(OLUTA)-GUS … were introgressed into drl1-2 … marker lines displayed promoter activity in the dorsal part of the leaf primordium, including the vascular bundles
PubMed ID: 16682355
Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway
 REVOLUTA … Expression is re- stricted to the adaxial domain
PubMed ID: 16699177
Xu L, Yang L, Pi L, Liu Q, Ling Q, Wang H, Poethig RS, Huang H—Genetic interaction between the AS1-AS2 and RDR6-SGS3-AGO7 pathways for leaf morphogenesis
 leaves of the sgs3-11 as2-101 … contained … reduced levels of REV transcripts
 REV transcripts were detected in the earlier stage leaf primordia in … zip as1-101
 leaves of the … zip as2-101 … contained … reduced levels of REV transcripts
 REV … repressed … in the rdr6-3 as2-101 leaves
 REV transcripts were detected in the earlier stage leaf primordia in … sgs3-11 as2-101
 rdr6-3 as2-101 … leaves … contained … reduced levels of REV transcripts
 REV transcripts were detected in the earlier stage leaf primordia in … zip as2-101
 REV transcripts were detected in the earlier stage leaf primordia in sgs3-11 as1-101
PubMed ID: 17559509
Iwakawa H, Iwasaki M, Kojima S, Ueno Y, Soma T, Tanaka H, Semiarti E, Machida Y, Machida C—Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves
 in as2-1 … No significant differences in levels of transcripts were detected for … REV
 in as1-1 … No significant differences in levels of transcripts were detected for … REV
PubMed ID: 19717616
Vandenbussche M, Horstman A, Zethof J, Koes R, Rijpkema AS, Gerats T—Differential recruitment of WOX transcription factors for lateral development and organ fusion in Petunia and Arabidopsis
 In Arabidopsis, organ polarity regulation has been characterized extensively at the molecular level. We therefore have monitored the expression levels of a selection of Arabidopsis genes known to be involved in abaxial/adaxial patterning. The selection of genes comprises … REVOLUTA … None of the monitored Arabidopsis genes exhibited significant changes in transcript levels between wox1 prs mutant samples and the wild type
PubMed ID: 20628155
Sarojam R, Sappl PG, Goldshmidt A, Efroni I, Floyd SK, Eshed Y, Bowman JL—Differentiating Arabidopsis shoots from leaves by combined YABBY activities
 YABBY triple mutants display reduced expression of … REV
PubMed ID: 20807212
Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis
 REV and ATHB-15 trans-cripts were strongly enhanced in Dof5.1-D (Figure 6a); however, ATHB-15 was not increased in DEX::Dof5.1 plants upon DEX treatment whereas REV transcript was enhanced (Figure 6b). Increased expression of ATHB-15 in Dof5.1-D is probably due to a secondary effect
 REV expression was decreased in 35S::Dof5.1ΔAct plants although the levels were different depending on transgenic lines
PubMed ID: 21223391
Szakonyi D, Byrne ME—Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana
 REV:REV-VENUS … expressed in the apical and central regions of wild-type embryos
PubMed ID: 21251100
Horiguchi G, Mollá-Morales A, Pérez-Pérez JM, Kojima K, Robles P, Ponce MR, Micol JL, Tsukaya H—Differential contributions of ribosomal protein genes to Arabidopsis thaliana leaf development
 agreement with the synergistic polarity defects observed in rpl4d-3 as2-1 … expression … REV were expressed at similar levels in the … parents
PubMed ID: 22003085
Wang W, Xu B, Wang H, Li J, Huang H, Xu L—YUCCA genes are expressed in response to leaf adaxial-abaxial juxtaposition and are required for leaf margin development
 pDR5::GUS … staining in the as2-1 rev-1 … leaves was also concentrated in the top portion of the protrusions
 YUC4 was expressed in the leaf protrusions of the mock-treated as2-1 rev-1
 as2-1 rev-1 … when … treated with 1 μM NPA … we did not observe the small GUS-staining spots on leaf surfaces
 as2-1 rev-1 … expressions of … YUC4 … associated with the protrusions on leaves
 as2-1 rev-1 … expressions of YUC1 … associated with the protrusions on leaves
 as2-1 rev-1 … expressions of … YUC2 … associated with the protrusions on leaves
PubMed ID: 22026817
Xu D, Huang W, Li Y, Wang H, Huang H, Cui X—Elongator complex is critical for cell cycle progression and leaf patterning in Arabidopsis
 We next examined expression of leaf polarity marker genes REVOLUTA (REV) and FILAMENTOUS FLOWER (FIL) in the elo2 as2 background. rev-9 is a T-DNA enhancer trap line in which β-glucuronidase (GUS) staining represents the expression of the leaf adaxial marker REV (Emery et al. 2003; Hawker and Bowman 2004). Compared with that in the rev-9/+ plant (Fig. 1q), GUS staining was not detected from needle-like leaves of the elo2 as2 rev-9/+ plant
PubMed ID: 23268445
Ben Chaabane S, Liu R, Chinnusamy V, Kwon Y, Park JH, Kim SY, Zhu JK, Yang SW, Lee BH.—STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis
 Compared with WT, the accumulation of … REV transcripts was higher in sta1-1, which is linked to decreased miR164/166 levels and explains the serrated leaf phenotype of sta1-1
PubMed ID: 24464295
Huang T, Harrar Y, Lin C, Reinhart B, Newell NR, Talavera-Rauh F, Hokin SA, Barton MK, Kerstetter RA—Arabidopsis KANADI1 acts as a transcriptional repressor by interacting with a specific cis-element and regulates auxin biosynthesis, transport, and signaling in opposition to HD-ZIPIII factors
 we found evidence for regulation by … GR-REV of … At5g47800
 A third technique, qRT-PCR, on independent samples confirmed statistically significant upregulation of NPY1 by GR-REV in the presence and absence of CHX, indicating that NPY1 is likely a direct target of REV activation
 qRT-PCR on an independent set of samples showed upregulation of WAG1 by GR-REV both in the presence and absence of CHX
 we found evidence for regulation by … GR-REV of … ARF3
 we found evidence for regulation by … GR-REV of … LAX3
 we found evidence for regulation by … GR-REV of … YUCCA5
 we found evidence for regulation by … GR-REV of … LAX1
 we found evidence for regulation by … GR-REV of … At1g50280
 we found evidence for regulation by … GR-REV of … LAX2
 we found evidence for regulation by … GR-REV of … TAA1
 we found evidence for regulation by … GR-REV of … ENP1/NPY1
 ARF3/ETTIN showed reproducible upregulation by GR-REV
 we found evidence for regulation by … GR-REV of … At1g52770
DNA–protein interaction
PubMed ID: 20807212
Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis
 The results from both in vitro and in vivo binding assays demonstrate that Dof5.1 directly binds to the REV promoter
 The EMSA result showed that, GST alone did not bind to the 89-bp long substrate (Figure 6d left, lane 2) but the GST–Dof5.1DB fusion protein migrated with promoter DNA
Genetic interaction
PubMed ID: 20807212
Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis
 The resulting Dof5.1-D/rev plants lacked the upward-curling phenotype of Dof5.1-D, thereby displaying almost WT morphology
PubMed ID: 22003085
Wang W, Xu B, Wang H, Li J, Huang H, Xu L—YUCCA genes are expressed in response to leaf adaxial-abaxial juxtaposition and are required for leaf margin development
 leaves … as2-1 rev-1 … were smaller than … those of the corresponding single mutants
Process
PubMed ID: 16682355
Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway
 REVOLUTA … specifying adaxial identity
Regulation of gene expression
PubMed ID: 16682355
Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway
 The microRNA miR165, which regulates class III HD- ZIP gene expression through transcript cleavage
 REVOLUTA … Expression is re- stricted … by KANADI (KAN) genes
PubMed ID: 20807212
Kim HS, Kim SJ, Abbasi N, Bressan RA, Yun DJ, Yoo SD, Kwon SY, Choi SB—The DOF transcription factor Dof5.1 influences leaf axial patterning by promoting Revoluta transcription in Arabidopsis
 These results strongly indicate that Dof5.1 activates REV transcription
PubMed ID: 24464295
Huang T, Harrar Y, Lin C, Reinhart B, Newell NR, Talavera-Rauh F, Hokin SA, Barton MK, Kerstetter RA—Arabidopsis KANADI1 acts as a transcriptional repressor by interacting with a specific cis-element and regulates auxin biosynthesis, transport, and signaling in opposition to HD-ZIPIII factors
 REV increases transcription, most likely by direct activation, of NPY1
Regulation of phenotype
PubMed ID: 16682355
Garcia D, Collier SA, Byrne ME, Martienssen RA—Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway
 REVOLUTA, influence leaf shape
  1. Seventy-eight records are available in LEAFDATA for AT5G60690, REV gene. These statements are organized according to information type and original publication