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Table 2 Phenotype annotation exported from Leaf Knowtator

From: LEAFDATA: a literature-curated database for Arabidopsis leaf development

Database columns

Entries

File

21401745.txt.knowtator.xml

Class

Phenotype

Annotator

Dora Szakonyi, LEAFDATA

Spanned text

The rid2-1 mutant was temperature sensitive for seedling growth as well as for callus formation. In rid2-1 seedlings grown at 22 °C, the true leaves were pointed

Annotated text

Genotype ID = rid2-1|Property Slot = NULL|Value ID = pointed|Plant part ID = leaves

Growth condition

 

Developmental stage

 

Plant part

leaf_PO:0025034

Localisation

 

Property

shape_PATO:0000052

Process

 

Value

pointed_PATO:0002258

Regulation

 

Gene expression

 

Gene studied

 

Interaction type

 

Protein studied

 

Interactor protein

 

Protein

 

Gene target

 

Genetic interactor

 

DNA target

 

Genotype ID

mutated gene_MI:0804

Genotype details

Gene ID = AT5G57280 | Genotype_Zygosity = homozygous diploid _APO:0000229 | Mutant LOF_GOF ID = loss of function_APO:0000011

Factuality

 
  1. In LEAFDATA, a complex range of information is attached to each displayed statements deposited as spanned text. Different classes have distinct predefined slots however records are converted into a single table. Database columns corresponds to all available Leaf Knowtator slots. File, Annotator, Spanned text and Annotated text information is automatically added to curated statements