TY - JOUR AU - Bock, C. H. AU - Poole, G. H. AU - Parker, P. E. AU - Gottwald, T. R. PY - 2010 DA - 2010// TI - Plant Disease Severity Estimated Visually, by Digital Photography and Image Analysis, and by Hyperspectral Imaging JO - CRC Crit Rev Plant Sci VL - 29 UR - https://doi.org/10.1080/07352681003617285 DO - 10.1080/07352681003617285 ID - Bock2010 ER - TY - JOUR AU - Poland, J. A. AU - Nelson, R. J. PY - 2011 DA - 2011// TI - In the eye of the beholder: the effect of rater variability and different rating scales on QTL mapping JO - Phytopathology VL - 101 UR - https://doi.org/10.1094/PHYTO-03-10-0087 DO - 10.1094/PHYTO-03-10-0087 ID - Poland2011 ER - TY - JOUR AU - Bock, C. H. AU - Parker, P. E. AU - Cook, A. Z. AU - Gottwald, T. R. PY - 2008 DA - 2008// TI - Visual Rating and the Use of Image Analysis for Assessing Different Symptoms of Citrus Canker on Grapefruit Leaves JO - Plant Dis VL - 92 UR - https://doi.org/10.1094/PDIS-92-4-0530 DO - 10.1094/PDIS-92-4-0530 ID - Bock2008 ER - TY - STD TI - Sherwood RT, Berg CC, Hoover MR, Zeiders KE. Illusions in visual assessment of Stagonospora leaf spot of Orchardgrass. Phytopathology 1983:173–177. ID - ref4 ER - TY - JOUR AU - Rousseau, C. AU - Belin, É. AU - Bove, E. AU - Rousseau, D. AU - Fabre, F. AU - Berruyer, R. PY - 2013 DA - 2013// TI - High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis JO - Plant Methods VL - 9 UR - https://doi.org/10.1186/1746-4811-9-17 DO - 10.1186/1746-4811-9-17 ID - Rousseau2013 ER - TY - JOUR AU - Xie, W. AU - Yu, K. AU - Pauls, K. P. AU - Navabi, A. PY - 2012 DA - 2012// TI - Application of image analysis in studies of quantitative disease resistance, exemplified using common bacterial blight-common bean pathosystem JO - Phytopathology VL - 102 UR - https://doi.org/10.1094/PHYTO-06-11-0175 DO - 10.1094/PHYTO-06-11-0175 ID - Xie2012 ER - TY - JOUR AU - Chéné, Y. AU - Rousseau, D. AU - Lucidarme, P. AU - Bertheloot, J. AU - Caffier, V. AU - Morel, P. PY - 2012 DA - 2012// TI - On the use of depth camera for 3D phenotyping of entire plants JO - Comput Electron Agric VL - 82 UR - https://doi.org/10.1016/j.compag.2011.12.007 DO - 10.1016/j.compag.2011.12.007 ID - Chéné2012 ER - TY - JOUR AU - Pace, J. AU - Lee, N. AU - Naik, H. S. AU - Ganapathysubramanian, B. AU - Lübberstedt, T. PY - 2014 DA - 2014// TI - Analysis of Maize (Zea mays L.) Seedling Roots with the High-Throughput Image Analysis Tool ARIA (Automatic Root Image Analysis) JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0108255 DO - 10.1371/journal.pone.0108255 ID - Pace2014 ER - TY - JOUR AU - Green, W. A. AU - Little, S. A. AU - Price, C. A. AU - Wing, S. L. AU - Smith, S. Y. AU - Kotrc, B. PY - 2014 DA - 2014// TI - Reading the leaves: A comparison of leaf rank and automated areole measurement for quantifying aspects of leaf venation JO - Appl Plant Sci VL - 2 ID - Green2014 ER - TY - JOUR AU - Sighicelli, M. AU - Guarneri, M. PY - 2014 DA - 2014// TI - Assessing the poplar photochemical response to high zinc concentrations by image processing and statistical approach JO - Photosynth Res VL - 122 UR - https://doi.org/10.1007/s11120-014-0028-2 DO - 10.1007/s11120-014-0028-2 ID - Sighicelli2014 ER - TY - JOUR AU - Mishra, A. AU - Mishra, K. B. AU - Höermiller, I. I. AU - Heyer, A. G. AU - Nedbal, L. PY - 2011 DA - 2011// TI - Chlorophyll fluorescence emission as a reporter on cold tolerance in Arabidopsis thaliana accessions JO - Plant Signal Behav VL - 6 UR - https://doi.org/10.4161/psb.6.2.15278 DO - 10.4161/psb.6.2.15278 ID - Mishra2011 ER - TY - JOUR AU - Green, J. M. AU - Appel, H. AU - Rehrig, E. M. AU - Harnsomburana, J. AU - Chang, J. -. F. AU - Balint-Kurti, P. J. PY - 2012 DA - 2012// TI - PhenoPhyte: a flexible affordable method to quantify 2D phenotypes from imagery JO - Plant Methods VL - 8 UR - https://doi.org/10.1186/1746-4811-8-45 DO - 10.1186/1746-4811-8-45 ID - Green2012 ER - TY - JOUR AU - Vylder, J. AU - Vandenbussche, F. AU - Hu, Y. AU - Philips, W. AU - Straeten, D. PY - 2012 DA - 2012// TI - Rosette tracker: an open source image analysis tool for automatic quantification of genotype effects JO - Plant Physiol VL - 160 UR - https://doi.org/10.1104/pp.112.202762 DO - 10.1104/pp.112.202762 ID - Vylder2012 ER - TY - JOUR AU - Whan, A. P. AU - Smith, A. B. AU - Cavanagh, C. R. AU - Ral, J. -. P. F. AU - Shaw, L. M. AU - Howitt, C. A. PY - 2014 DA - 2014// TI - GrainScan: a low cost, fast method for grain size and colour measurements JO - Plant Methods VL - 10 UR - https://doi.org/10.1186/1746-4811-10-23 DO - 10.1186/1746-4811-10-23 ID - Whan2014 ER - TY - JOUR AU - Zhou, J. AU - Spallek, T. AU - Faulkner, C. AU - Robatzek, S. PY - 2012 DA - 2012// TI - CalloseMeasurer: a novel software solution to measure callose deposition and recognise spreading callose patterns JO - Plant Methods VL - 8 UR - https://doi.org/10.1186/1746-4811-8-49 DO - 10.1186/1746-4811-8-49 ID - Zhou2012 ER - TY - JOUR AU - Bauriegel, E. AU - Giebel, A. AU - Herppich, W. B. PY - 2011 DA - 2011// TI - Hyperspectral and chlorophyll fluorescence imaging to analyse the impact of Fusarium culmorum on the photosynthetic integrity of infected wheat ears JO - Sensors (Basel) VL - 11 UR - https://doi.org/10.3390/s110403765 DO - 10.3390/s110403765 ID - Bauriegel2011 ER - TY - JOUR AU - Belin, É. AU - Rousseau, D. AU - Boureau, T. AU - Caffier, V. PY - 2013 DA - 2013// TI - Thermography versus chlorophyll fluorescence imaging for detection and quantification of apple scab JO - Comput Electron Agric VL - 90 UR - https://doi.org/10.1016/j.compag.2012.09.014 DO - 10.1016/j.compag.2012.09.014 ID - Belin2013 ER - TY - JOUR AU - Berger, S. AU - Benediktyová, Z. AU - Matouš, K. AU - Bonfig, K. B. AU - Mueller, M. J. AU - Nedbal, L. PY - 2007 DA - 2007// TI - Visualization of dynamics of plant-pathogen interaction by novel combination of chlorophyll fluorescence imaging and statistical analysis: differential effects of virulent and avirulent strains of P. syringae and of oxylipins on A. thaliana JO - J Exp Bot VL - 58 UR - https://doi.org/10.1093/jxb/erl208 DO - 10.1093/jxb/erl208 ID - Berger2007 ER - TY - JOUR AU - Chaerle, L. AU - Hagenbeek, D. AU - Bruyne, E. AU - Valcke, R. AU - Straeten, D. PY - 2004 DA - 2004// TI - Thermal and chlorophyll-fluorescence imaging distinguish plant-pathogen interactions at an early stage JO - Plant Cell Physiol VL - 45 UR - https://doi.org/10.1093/pcp/pch097 DO - 10.1093/pcp/pch097 ID - Chaerle2004 ER - TY - JOUR AU - Pérez-Bueno, M. L. AU - Ciscato, M. AU - VandeVen, M. AU - García-Luque, I. AU - Valcke, R. AU - Barón, M. PY - 2006 DA - 2006// TI - Imaging viral infection: studies on Nicotiana benthamiana plants infected with the pepper mild mottle tobamovirus JO - Photosynth Res VL - 90 UR - https://doi.org/10.1007/s11120-006-9098-0 DO - 10.1007/s11120-006-9098-0 ID - Pérez-Bueno2006 ER - TY - JOUR AU - Pineda, M. AU - Olejníčková, J. AU - Cséfalvay, L. AU - Barón, M. PY - 2011 DA - 2011// TI - Tracking viral movement in plants by means of chlorophyll fluorescence imaging JO - J Plant Physiol VL - 168 UR - https://doi.org/10.1016/j.jplph.2011.06.013 DO - 10.1016/j.jplph.2011.06.013 ID - Pineda2011 ER - TY - JOUR AU - Woo, N. S. AU - Badger, M. R. AU - Pogson, B. J. PY - 2008 DA - 2008// TI - A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence JO - Plant Methods VL - 4 UR - https://doi.org/10.1186/1746-4811-4-27 DO - 10.1186/1746-4811-4-27 ID - Woo2008 ER - TY - JOUR AU - Mishra, A. AU - Heyer, A. G. AU - Mishra, K. B. PY - 2014 DA - 2014// TI - Chlorophyll fluorescence emission can screen cold tolerance of cold acclimated Arabidopsis thaliana accessions JO - Plant Methods VL - 10 UR - https://doi.org/10.1186/1746-4811-10-38 DO - 10.1186/1746-4811-10-38 ID - Mishra2014 ER - TY - JOUR AU - Chaerle, L. AU - Straeten, D. PY - 2001 DA - 2001// TI - Seeing is believing: imaging techniques to monitor plant health JO - Biochim Biophys Acta VL - 1519 UR - https://doi.org/10.1016/S0167-4781(01)00238-X DO - 10.1016/S0167-4781(01)00238-X ID - Chaerle2001 ER - TY - JOUR AU - Sankaran, S. AU - Mishra, A. AU - Ehsani, R. AU - Davis, C. PY - 2010 DA - 2010// TI - A review of advanced techniques for detecting plant diseases JO - Comput Electron Agric VL - 72 UR - https://doi.org/10.1016/j.compag.2010.02.007 DO - 10.1016/j.compag.2010.02.007 ID - Sankaran2010 ER - TY - JOUR AU - Rodríguez-Moreno, L. AU - Pineda, M. AU - Soukupová, J. AU - Macho, A. P. AU - Beuzón, C. R. AU - Barón, M. PY - 2008 DA - 2008// TI - Early detection of bean infection by Pseudomonas syringae in asymptomatic leaf areas using chlorophyll fluorescence imaging JO - Photosynth Res VL - 96 UR - https://doi.org/10.1007/s11120-007-9278-6 DO - 10.1007/s11120-007-9278-6 ID - Rodríguez-Moreno2008 ER - TY - STD TI - Pérez-Bueno ML, Pineda M, Díaz-Casado E, Barón M: Spatial and temporal dynamics of primary and secondary metabolism in Phaseolus vulgaris challenged by Pseudomonas syringae. Physiol Plant 2015. ID - ref27 ER - TY - JOUR AU - Baker, N. R. PY - 2008 DA - 2008// TI - Chlorophyll fluorescence: a probe of photosynthesis in vivo JO - Annu Rev Plant Biol VL - 59 UR - https://doi.org/10.1146/annurev.arplant.59.032607.092759 DO - 10.1146/annurev.arplant.59.032607.092759 ID - Baker2008 ER - TY - JOUR AU - Gorbe, E. AU - Calatayud, A. PY - 2012 DA - 2012// TI - Applications of chlorophyll fluorescence imaging technique in horticultural research: A review JO - Sci Hortic (Amsterdam) VL - 138 UR - https://doi.org/10.1016/j.scienta.2012.02.002 DO - 10.1016/j.scienta.2012.02.002 ID - Gorbe2012 ER - TY - JOUR AU - Baker, N. R. AU - Rosenqvist, E. PY - 2004 DA - 2004// TI - Applications of chlorophyll fluorescence can improve crop production strategies: an examination of future possibilities JO - J Exp Bot VL - 55 UR - https://doi.org/10.1093/jxb/erh196 DO - 10.1093/jxb/erh196 ID - Baker2004 ER - TY - JOUR AU - Bresson, J. AU - Vasseur, F. AU - Dauzat, M. AU - Labadie, M. AU - Varoquaux, F. AU - Touraine, B. PY - 2014 DA - 2014// TI - Interact to survive: Phyllobacterium brassicacearum improves Arabidopsis tolerance to severe water deficit and growth recovery JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0107607 DO - 10.1371/journal.pone.0107607 ID - Bresson2014 ER - TY - JOUR AU - Mishra, K. B. AU - Iannacone, R. AU - Petrozza, A. AU - Mishra, A. AU - Armentano, N. AU - Vecchia, G. PY - 2012 DA - 2012// TI - Engineered drought tolerance in tomato plants is reflected in chlorophyll fluorescence emission JO - Plant Sci VL - 182 UR - https://doi.org/10.1016/j.plantsci.2011.03.022 DO - 10.1016/j.plantsci.2011.03.022 ID - Mishra2012 ER - TY - JOUR AU - Cameron, D. D. AU - Geniez, J. -. M. AU - Seel, W. E. AU - Irving, L. J. PY - 2008 DA - 2008// TI - Suppression of Host Photosynthesis by the Parasitic Plant Rhinanthus minor JO - Ann Bot VL - 101 UR - https://doi.org/10.1093/aob/mcm324 DO - 10.1093/aob/mcm324 ID - Cameron2008 ER - TY - JOUR AU - Mauromicale, G. AU - Monaco, A. L. AU - Longo, A. M. G. PY - 2008 DA - 2008// TI - Effect of Branched Broomrape (Orobanche ramosa) Infection on the Growth and Photosynthesis of Tomato JO - Weed Sci VL - 56 UR - https://doi.org/10.1614/WS-07-147.1 DO - 10.1614/WS-07-147.1 ID - Mauromicale2008 ER - TY - JOUR AU - Li, L. AU - Xu, X. AU - Sun, Y. AU - Han, W. AU - Tu, P. PY - 2012 DA - 2012// TI - Effects of parasitic plant Cistanche deserticola on chlorophyll a fluorescence and nutrient accumulation of host plant Haloxylon ammodendron in the Taklimakan Desert JO - J Arid Land VL - 4 UR - https://doi.org/10.3724/SP.J.1227.2012.00342 DO - 10.3724/SP.J.1227.2012.00342 ID - Li2012 ER - TY - JOUR AU - Parker, C. PY - 2009 DA - 2009// TI - Observations on the current status of Orobanche and Striga problems worldwide JO - Pest Manag Sci VL - 65 UR - https://doi.org/10.1002/ps.1713 DO - 10.1002/ps.1713 ID - Parker2009 ER - TY - JOUR AU - Joel, D. AU - Hershenhorn, J. AU - Eizenberg, H. AU - Aly, R. AU - Ejeta, G. AU - Rich, P. PY - 2007 DA - 2007// TI - Biology and management of weedy root parasites JO - Hortic Rev (Am Soc Hortic Sci) VL - 33 UR - https://doi.org/10.1002/9780470168011.ch4 DO - 10.1002/9780470168011.ch4 ID - Joel2007 ER - TY - JOUR AU - Rubiales, D. AU - Fernández-aparicio, M. PY - 2012 DA - 2012// TI - Innovations in parasitic weeds management in legume crops . A review JO - Agron Sustain Dev VL - 32 UR - https://doi.org/10.1007/s13593-011-0045-x DO - 10.1007/s13593-011-0045-x ID - Rubiales2012 ER - TY - CHAP AU - Goldwasser, Y. AU - Rodenburg, J. ED - Joel, D. ED - Musselmann, M. PY - 2013 DA - 2013// TI - Integrated Agronomic Management of Parasitic Weed Seed Banks BT - Parasit Orobanchaceae PB - Springer CY - Heidelberg New York Dordrecht London UR - https://doi.org/10.1007/978-3-642-38146-1_22 DO - 10.1007/978-3-642-38146-1_22 ID - Goldwasser2013 ER - TY - JOUR AU - Fernandez-Aparicio, M. AU - Sillero, J. AU - Pérez-de-Luque, A. AU - Rubiales, D. PY - 2008 DA - 2008// TI - Identification of sources of resistance to crenate broomrape (Orobanche crenata) in Spanish lentil (Lens culinaris) germplasm JO - Weed Res VL - 48 UR - https://doi.org/10.1111/j.1365-3180.2008.00604.x DO - 10.1111/j.1365-3180.2008.00604.x ID - Fernandez-Aparicio2008 ER - TY - JOUR AU - Molinero-Ruiz, M. L. AU - García-Ruiz, R. AU - Melero-Vara, J. M. AU - Domínguez, J. PY - 2009 DA - 2009// TI - Orobanche cumana race F: performance of resistant sunflower hybrids and aggressiveness of populations of the parasitic weed JO - Weed Res VL - 49 UR - https://doi.org/10.1111/j.1365-3180.2009.00708.x DO - 10.1111/j.1365-3180.2009.00708.x ID - Molinero-Ruiz2009 ER - TY - JOUR AU - Labrousse, P. PY - 2001 DA - 2001// TI - Several Mechanisms are Involved in Resistance of Helianthus to Orobanche cumana Wallr JO - Ann Bot VL - 88 UR - https://doi.org/10.1006/anbo.2001.1520 DO - 10.1006/anbo.2001.1520 ID - Labrousse2001 ER - TY - JOUR AU - Gauthier, M. AU - Véronési, C. AU - El-Halmouch, Y. AU - Leflon, M. AU - Jestin, C. AU - Labalette, F. PY - 2012 DA - 2012// TI - Characterisation of resistance to branched broomrape, Phelipanche ramosa, in winter oilseed rape JO - Crop Prot VL - 42 UR - https://doi.org/10.1016/j.cropro.2012.07.002 DO - 10.1016/j.cropro.2012.07.002 ID - Gauthier2012 ER - TY - BOOK AU - Sokal, R. R. AU - Rohlf, F. J. PY - 1969 DA - 1969// TI - Biometry. The Principles and Practice of Statistics in Biological Research PB - W. H. Free CY - San Francisco ID - Sokal1969 ER - TY - JOUR AU - Bhattacharyya, A. PY - 1943 DA - 1943// TI - On a measure of divergence between two statistical populations defined by their probability distribution JO - Bull Calcutta Math Soc VL - 35 ID - Bhattacharyya1943 ER - TY - JOUR AU - Mishra, A. AU - Matous, K. AU - Mishra, K. B. AU - Nedbal, L. PY - 2009 DA - 2009// TI - Towards discrimination of plant species by machine vision: advanced statistical analysis of chlorophyll fluorescence transients JO - J Fluoresc VL - 19 UR - https://doi.org/10.1007/s10895-009-0491-x DO - 10.1007/s10895-009-0491-x ID - Mishra2009 ER - TY - JOUR AU - Lichtenthaler, H. K. AU - Buschmann, C. AU - Knapp, M. PY - 2005 DA - 2005// TI - How to correctly determine the different chlorophyll fluorescence parameters and the chlorophyll fluorescence decrease ratio RFd of leaves with the PAM fluorometer JO - Photosynthetica VL - 43 UR - https://doi.org/10.1007/s11099-005-0062-6 DO - 10.1007/s11099-005-0062-6 ID - Lichtenthaler2005 ER - TY - JOUR AU - Gestel, J. AU - Vlamakis, H. AU - Kolter, R. PY - 2015 DA - 2015// TI - New Tools for Comparing Microscopy Images: Quantitative Analysis of Cell Types in Bacillus subtilis JO - J Bacteriol VL - 197 UR - https://doi.org/10.1128/JB.02501-14 DO - 10.1128/JB.02501-14 ID - Gestel2015 ER - TY - JOUR AU - Matous, K. AU - Benediktyová, Z. AU - Berger, S. AU - Roitsch, T. AU - Nedbal, L. PY - 2006 DA - 2006// TI - Case study of combinatorial imaging: what protocol and what chlorophyll fluorescence image to use when visualizing infection of Arabidopsis thaliana by Pseudomonas syringae? JO - Photosynth Res VL - 90 UR - https://doi.org/10.1007/s11120-006-9120-6 DO - 10.1007/s11120-006-9120-6 ID - Matous2006 ER - TY - STD TI - Horton P, Ruban A. Regulation of Photosystem II. Photosynth Res 1992:375–385. ID - ref50 ER - TY - STD TI - Horton P, Ruban aV, Walters RG. Regulation of Light Harvesting in Green Plants. Annu Rev Plant Physiol Plant Mol Biol. 1996;47:655–84. ID - ref51 ER - TY - JOUR AU - Genty, B. AU - Briantais, J. -. M. AU - Baker, N. R. PY - 1989 DA - 1989// TI - The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence JO - Biochim Biophys Acta - Gen Subj VL - 990 UR - https://doi.org/10.1016/S0304-4165(89)80016-9 DO - 10.1016/S0304-4165(89)80016-9 ID - Genty1989 ER - TY - JOUR AU - Oxborough, K. PY - 2004 DA - 2004// TI - Imaging of chlorophyll a fluorescence: theoretical and practical aspects of an emerging technique for the monitoring of photosynthetic performance JO - J Exp Bot VL - 55 UR - https://doi.org/10.1093/jxb/erh145 DO - 10.1093/jxb/erh145 ID - Oxborough2004 ER - TY - JOUR AU - Lichtenthaler, H. K. AU - Miehe, J. PY - 1997 DA - 1997// TI - Fluorescence imaging as a diagnostic tool for plant stress JO - Trends Plant Sci VL - 2 ID - Lichtenthaler1997 ER - TY - JOUR AU - Pau, G. AU - Fuchs, F. AU - Sklyar, O. AU - Boutros, M. AU - Huber, W. PY - 2010 DA - 2010// TI - EBImage - an R package for image processing with applications to cellular phenotypes JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq046 DO - 10.1093/bioinformatics/btq046 ID - Pau2010 ER - TY - BOOK AU - D’Orazio, M. PY - 2014 DA - 2014// TI - StatMatch: Statistical Matching (aka Data Fusion) ID - D’Orazio2014 ER - TY - BOOK AU - Team, R. C. PY - 2013 DA - 2013// TI - R: A Language and Environment for Statistical Computing ID - Team2013 ER -