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Figure 6 | Plant Methods

Figure 6

From: A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads

Figure 6

Cluster analysis of differentially expressed genes in the interface region of C. japonica-G. max association. (A) Expression patterns of clusters that had single expression peak at one of the 5 stages. Both cluster 7 and cluster 2 peaked at 72 haa. (B) GOslim categories enriched in C. japonica and G. max. Grey areas indicate occurrence of GOslim category enrichment. Abbreviations: MF, molecular functions; CC, cellular components; BP, biological processes; TF, transcription factor. (C) Expression patterns of 5 C. japonica contigs with similarity to pectate lyase (e value < 1e-10) and 23 G. max contigs with similarity to LeEXPA5 (e value < 1e-10).

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