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Figure 3 | Plant Methods

Figure 3

From: A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads

Figure 3

Scheme of read mapping to estimate the rate of false classification. (A) Cj_nc_reads and Ib_nc_reads were mapped to a merged transcript set of Cj_nc_contigs and Ib_nc_contigs. (B) Cj_nc_reads and Ib_nc_reads were mapped to a merged transcript set of Cj_contigs_ci1 and Ib_contigs. (C) Cj_nc_reads and Cj_Ibif_reads were mapped onto Cj_contigs_ci1. Ib_nc_reads and Ib_Cjif_reads were mapped onto Ib_contigs. (D) Cj_nc_reads, Cj_Ibif_reads, Ib_nc_reads and Ib_Cjif_reads were mapped onto a merged transcript set of Cj_contigs_ci1 and Ib_contigs. The result of the mapping in panel (C) was used for the identification of differentially expressed genes.

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Plant Methods

ISSN: 1746-4811