WallProtDB, a database resource for plant cell wall proteomics

Table 1 Proteomes included in WallProtDB

Plant species	Common name	Sequence databases	Proteome size ^a
Arabidopsis thaliana	Thale cress	TAIR10 http://www.ncbi.nlm.nih.gov/	495
Brachypodium distachyon	False brome	http://www.brachypodium.org/database	314
Brassica oleracea	cabbage	COMPBIO http://compbio.dfci.harvard.edu/index.html	162 (ESTs)
Gossypium hirsutum	cotton	COTTONGEN http://www.cottongen.org/search/search_by_gene	116
Linum usitatissimum	flax	Genolin flax unigenes https://urgi.versailles.inra.fr/Species/Flax/Download-sequences	106
Linum usitatissimum	flax	Phytozome http://www.phytozome.net/	106
Medicago sativa	Alfalfa	JCVI: Medicago truncatula Genome Project http://medicago.jcvi.org/medicago/index.php	199
Oryza sativa	Rice	RAPD http://rapdb.dna.affrc.go.jp	270
Populus spp	Poplar	DOE Joint Genome Institute http://genome.jgi-psf.org/Poptr1_1/Poptr1_1.home.html	142
Populus spp	Poplar	Phytozome http://www.phytozome.net/	142
Saccharum officinarum	Sugarcane	SUCEST http://www.sucest-fun.org/index.php/overview/sucest-fun-project	69 (ESTs)
Solanum lycopersicum	Tomato	sol genomics network http://solgenomics.net/	161
Solanum tuberosum	Potato	COMPBIO http://compbio.dfci.harvard.edu/index.html	136

^aESTs mean that protein identification was done using translated ESTs because of the lack of genomic data. Note that the distribution of proteins into functional classes is indicated in Additional file 1 for the cell wall proteome of all the plant species listed in this table.

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