Figure 1
From: Mapping mutations in plant genomes with the user-friendly web application CandiSNP
Screen-shot of the CandiSNP web application. CandiSNP is openly accessible online at http://candisnp.tsl.ac.uk. The application is laid out so users can make their way through the application in numbered steps. Users choose which genome they would like to use for comparison (the program currently supports Arabidopsis, rice, tomato, grape, maize and soybean genomes). The option of filtering SNPs concentrated around centromeres is also provided. Users then upload their SNP data file, indicate their preferred allele frequency cut-off, and choose from a number of different palettes for SNP visualization.