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Table 2 454 sequence reads in the SH*RH population

From: Novel applications of motif-directed profiling to identify disease resistance genes in plants

complete reads (#) bulk* specific K-mers (#) R gene family with highest homology
BR BS BR BS BR BS BR BS BR BS
   >= 2   >= 7   >= 12   >= 15  
17990 29516 128 256 0 20 0 1 0 0 Mi-1.2/Rpi-blb2
14848 28044 68 298 0 21 0 0 0 0 Hero
13487 23565 172 439 37 70 18 9 3 3 I-2/R3a/R3b
1427 2320 81 150 0 3 0 0 0 0 RB/Rpi-blb1/Rpi-pta1/Rpi-sto1
1228 2520 53 223 0 0 0 0 0 0 R1
1230 2011 64 99 0 0 0 0 0 0 Rpi-blb3/R2/Rpi-abpt1
277 516 14 29 0 0 0 0 0 0 NRC1
293 402 6 146 0 33 0 0 0 0 Rpi-chc1
209 362 0 25 0 2 0 0 0 0 Sw-5a
207 283 5 10 0 3 0 0 0 0 Rx/Gpa2
43 43 0 0 0 0 0 0 0 0 Prf1
22 31 0 0 0 0 0 0 0 0 Tm-2/Rpi-vnt1
1 1 0 0 0 0 0 0 0 0 N
51240 89583          total (E-value < e-20)**
88475 150513 591 1675 37 152 18 10 3 3 total
  1. >=n: K-mers that occurred more than n times were counted.
  2. * Individuals were grouped in resistant (R3a and R3b) and susceptible bulks (BR and BS).
  3. ** E-values were obtained after BLAST analysis against a database of 34 selected R genes.
  4. # numbers of.