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Table 2 454 sequence reads in the SH*RH population

From: Novel applications of motif-directed profiling to identify disease resistance genes in plants

complete reads (#)

bulk* specific K-mers (#)

R gene family with highest homology

BR

BS

BR

BS

BR

BS

BR

BS

BR

BS

  

>= 2

 

>= 7

 

>= 12

 

>= 15

 

17990

29516

128

256

0

20

0

1

0

0

Mi-1.2/Rpi-blb2

14848

28044

68

298

0

21

0

0

0

0

Hero

13487

23565

172

439

37

70

18

9

3

3

I-2/R3a/R3b

1427

2320

81

150

0

3

0

0

0

0

RB/Rpi-blb1/Rpi-pta1/Rpi-sto1

1228

2520

53

223

0

0

0

0

0

0

R1

1230

2011

64

99

0

0

0

0

0

0

Rpi-blb3/R2/Rpi-abpt1

277

516

14

29

0

0

0

0

0

0

NRC1

293

402

6

146

0

33

0

0

0

0

Rpi-chc1

209

362

0

25

0

2

0

0

0

0

Sw-5a

207

283

5

10

0

3

0

0

0

0

Rx/Gpa2

43

43

0

0

0

0

0

0

0

0

Prf1

22

31

0

0

0

0

0

0

0

0

Tm-2/Rpi-vnt1

1

1

0

0

0

0

0

0

0

0

N

51240

89583

        

total (E-value < e-20)**

88475

150513

591

1675

37

152

18

10

3

3

total

  1. >=n: K-mers that occurred more than n times were counted.
  2. * Individuals were grouped in resistant (R3a and R3b) and susceptible bulks (BR and BS).
  3. ** E-values were obtained after BLAST analysis against a database of 34 selected R genes.
  4. # numbers of.