Table 2 Frequencies of T-DNA insertions in the genic and intergenic regions compared with Tos17
From: FSTVAL: a new web tool to validate bulk flanking sequence tags
Type of sequences | Â | T-DNA | Tos17 | ||
|---|---|---|---|---|---|
| Â | Â | No of sequence | Ratio (%) | No of sequence | Ratio (%) |
Genic | Â | 273 | 41.8% | 2,350 | 60.3% |
| Â | Exon | 53 | 8.1% | 1,029 | 26.4% |
| Â | intron | 56 | 8.9% | 714 | 18.4% |
|  | 5'Upstream(−1,000 bp) | 138 | 21.1% | 429 | 11.0% |
|  | 3'Downstream(+300 bp) | 26 | 4.0% | 178 | 4.5% |
Intergenic | Â | 368 | 56.4% | 1,424 | 36.6% |
Repeat (>1) | Â | 12 | 1.8% | 120 | 3.1% |
Total | Â | 653 | 100.0% | 3,895 | 100.0% |