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Table 1 Summary characteristics of T-DNA flanking sequences

From: FSTVAL: a new web tool to validate bulk flanking sequence tags

Type of sequences

T-DNA FSTs

Tos17 FSTs

 

No of sequences

%

No of sequences

%

Acceptable sequence (A) a

706

63.4%

3,921

97.3%

Not acceptable sequence (NA) b

121

10.9%

89

2.2%

vector c

257

23.1%

13

0.3%

Low quality sequence (Low)

30

2.7%

7

0.2%

Total

1,117

100.0%

4,030

100.0%

  1. a FSTs larger than 30 bp after removal of the RB and adaptor sequences.
  2. b FSTs shorter than 30 bp after removal of the RB and adaptor sequences.
  3. c Binary vector or T-DNA tandem repeats.
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Plant Methods

ISSN: 1746-4811