Table 4 Summary of probe sets on custom-made CDF files for AGRONOMICS1 arrays

Number of probe sets

30,608

31,027

30,757

Control probe sets

371

371

371

Probe sets for Arabidopsis genes

30,237

30,656

30,386

Probe sets for nuclear genes

30,137

30,536

30,266

Probe sets for plastid genes

67

85

84

Probe sets for mitochondrial genes

33

35

36

One annotated transcript uniquely probed

25,387

24,426

24,139

The intersection of a set of annotated transcripts uniquely probed

4,325

5,661

5,644

Several annotated transcript exist with little overlap;

0

90

160

 1 is specifically probed

Several annotated transcript exist with little overlap;

131

70

86

 2 are specifically probed

Several annotated transcript exist with little overlap;

54

36

44

 3 are specifically probed

Several annotated transcript exist with little overlap;

15

6

6

 4 are specifically probed

Several annotated transcript exist with little overlap;

7

1

4

 5 are specifically probed

Several annotated transcript exist with little overlap;

1

1

1

 6 are specifically probed

2 largely overlapping genes probed

0

90

85

3 largely overlapping genes probed

0

2

2

4 largely overlapping genes probed

0

2

2