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Table 3 SOLiD mate-pair read links of spanning repetitive contigs

From: An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

 

Links

5'-Contig

3'-Contig

Repeat 1

3990

Contig00011

Contig00012

 

3226

Contig00059

Contig00050

 

206

Contig00012

Contig00050

 

210

Contig00011

Contig00059

Repeat 2

810

Contig00001

Contig00026

 

615

Contig00004

Contig00032

 

333

Contig00001

Contig00004

 

186

Contig00026

Contig00032

Repeat 3

53

Contig00026

Contig00281

 

51

Contig00395

Contig200056

 

31

Contig00026

Contig00395

 

14

Contig00281

Contig200056

  1. The contigs linked to the master circle are shown in bold.