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Figure 1 | Plant Methods

Figure 1

From: An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform

Figure 1

Circular representation of an assembly of the B. hygrometrica cp and mt genomes. Circle display (from the outside): (1) physical map scale in kilobase pairs (LSC region in blue, SSC region in green, and IRs regions in red); (2) read depths of the cp sequencing in yellow (step size: 1000 bp; cp assembly: range 0-100; mt assembly: range 0-160); (3) SOLiD mate-pair read validation with the 1-kb insert library in purple (insert size 600-1000 bp and step size 100 bp in the cp assembly and 500 bp in the mt assembly); (4) SOLiD mate-pair read validation with 2-kb library in orange (insert size 800-1200 bp and step size 100 bp in the cp assembly and 1000 bp in the mt assembly). The high variance in read depth of the mt genome results from the regions of chloroplast-like sequences. This figure was generated by the Circos program [33].

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Plant Methods

ISSN: 1746-4811