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Table 3 Case studies using the Maize Microarray Annotation Database

From: Maize microarray annotation database

Reference

Description *

Table (see Reference)

Total

Genomic Annotation Groups#

    

GMS

GMA

G

E

AM

I

Ma et al. [4]

a

Table S3

2285

1614 (70.6%)

141 (6.2%)

54 (2.4%)

108 (4.7%)

148 (6.5%)

220 (9.6%)

Ma et al. [4]

b

Table S4

281

209 (74.4%)

11 (3.9%)

7 (2.5%)

13 (4.6%)

27 (9.6%)

14 (5.0%)

Casati et al. [30]

c

Table S1

2092

1373 (65.6%)

142 (6.8%)

58 (2.8%)

111 (5.3%)

134 (6.4%)

274 (13.1%)

Skibbe et al. [31]

d

Table S1

449

329 (73.3%)

6 (1.3%)

18 (4.0%)

16 (3.6%)

35 (7.8%)

45 (10.0%)

Skibbe et al. [31]

e

Table S1

399

279 (69.9%)

15 (3.8%)

16 (4.0%)

18 (4.5%)

23 (5.8%)

48 (12.0%)

Wang et al. [4]

f

Table S3

416

159 (38.2%)

58 (13.9%)

22 (5.3%)

57 (13.7%)

14 (3.4%)

106 (25.5%)

Rajhi et al. [32]

g

Table S2

239

177 (74.1%)

15 (6.3%)

5 (2.1%)

10 (4.2%)

12 (5.0%)

20 (8.4%)

Rajhi et al. [32]

h

Table S3

336

278 (82.7%)

7 (2.1%)

8 (2.4%)

14 (4.2%)

15 (4.5%)

14 (4.2%)

  1. * Description
  2. a = Transcripts differentially expressed between meiotic and post-meiotic stages
  3. b = Zinc finger-related proteins
  4. c = Transcripts that are expressed differentially between mbd101 and chc101 RNAi transgenic plants and WT non transgenic siblings under control and/or UV-B conditions.
  5. d = Up-regulated genes between Mu-active vs inactive lines (Mitotic stage)
  6. e = Down-regulated genes between Mu-active vs inactive lines (Mitotic stage)
  7. f = 1.0 mm stage-specific genes of ms8 anthers expressed at later stages in normal anthers
  8. g = Genes up-regulated in maize root cortex during aerenchyma formation
  9. h = Genes down-regulated in maize root cortex during aerenchyma formation
  10. # Genomic annotations:
  11. GMS = Annotation by sense gene model
  12. GMA = Annotation by antisense gene model
  13. G = Annotation by gDNA (Genomic position)
  14. E = Annotation by EST
  15. AM = Ambiguous annotation
  16. I = Inconclusive annotation