|
Organism
|
PlasTi- microarray probes matching target plastid genome with E < 1 × 10-3
|
PlasTi- microarray probes matching target plastid genome with E ≤ 1 × 10-10
|
|---|
| |
All
|
SC coding
|
SC non-coding
|
IR coding
|
IR non-coding
| |
|
C.sa
|
1629
|
262
|
1062
|
53
|
252
|
1629
|
|
A.tha
|
1188 (72.9%)
|
246 (93.9%)
|
638 (60.1%)
|
53 (100%)
|
251 (99.6%)
|
1035 (63.5%)
|
|
N.tab
|
1253 (76.9%)
|
250 (95.4%)
|
706 (66.5%)
|
53 (100%)
|
244 (96.8%)
|
1108 (68.0%)
|
|
S.lyc
|
1212 (74.4%)
|
250 (95.4%)
|
666 (62.7%)
|
53 (100%)
|
243 (96.4%)
|
1086 (66.7%)
|
|
S.ole
|
927 (56.9%)
|
214 (81.7%)
|
470 (44.3%)
|
49 (92.5%)
|
194 (77.0%)
|
807 (49.5%)
|
|
L.sat
|
1225 (75.2%)
|
252 (96.2%)
|
682 (64.2%)
|
52 (98.1%)
|
239 (94.8%)
|
1078 (66.2%)
|
|
M.tru
|
1101 (67.6%)
|
238 (90.8%)
|
615 (57.9%)
|
52 (98.1%)
|
196 (77.8%)
|
944 (57.9%)
|
|
L.jap
|
1164 (71.4%)
|
247 (94.3%)
|
625 (58.9%)
|
52 (98.1%)
|
240 (95.2%)
|
1032 (63.4%)
|
|
P.tri
|
1287 (79.0%)
|
245 (93.5%)
|
740 (69.7%)
|
53 (100%)
|
249 (98.8%)
|
1142 (70.1%)
|
|
H.vul
|
927 (56.9%)
|
219 (83.6%)
|
474 (44.6%)
|
49 (92.5%)
|
185 (73.4%)
|
802 (49.2.%)
|
- Each probe was used as a query in a blastn search against each plastid genome, with the E value threshold set at 1 × 10-3. C.sa - Cucumis sativus [GenBank: NC_007144], A. tha - Arabidopsis thaliana [GenBank: NC_000932], N.tab - Nicotiana tabacum [GenBank: NC_001879], S.lyc - Solanum lycopersicon [GenBank: NC_007898], S.ole - Spinacia oleracea [GenBank: NC_002202], L.sat - Lactuca sativa [GenBank: NC_007578], M.tru - Medicago truncatula [GenBank: NC_003119], L.jap - Lotus japonicus [GenBank: NC_002694], P.tri - Populus trichocarpa [GenBank: NC_009143], H.vul - Hordeum vulgare [GenBank: NC_008590]. For each genome, number of probes matching with E value lower than the threshold as well as number of probes matching with E ≤ 1 × 10-10 is reported.
