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Table 2 Cross validation of Arabidopsis ecotypes from direct analysis in real-time mass spectrometry (DART-MS) spectral data of intact seed

From: A rapid, simple method for the genetic discrimination of intact Arabidopsis thaliana mutant seeds using metabolic profiling by direct analysis in real-time mass spectrometry

 

Prediction

 

Cross-validated count

ban

chs

co

Col-0

dfr

f3'h

f3h

ft

ldox

Ler

pap1-D

phyB

tt2

ugt78D2

Total

ban

18

0

0

0

1

1

0

0

0

0

0

1

0

0

21

chs

0

21

0

0

0

0

0

0

0

0

0

0

0

0

21

co

0

0

21

0

0

0

0

0

0

0

0

0

0

0

21

Col-0

0

0

0

19

0

0

0

0

0

0

0

2

0

0

21

dfr

2

3

0

0

8

1

0

0

2

0

4

1

0

0

21

f3'h

2

4

0

1

0

13

1

0

0

0

0

0

0

0

21

f3h

1

2

0

0

0

0

17

0

0

0

0

1

0

0

21

ft

0

0

0

0

0

0

0

21

0

0

0

0

0

0

21

ldox

1

2

0

0

0

2

3

0

12

0

1

0

0

0

21

Ler

0

0

0

0

0

0

0

0

0

17

0

0

4

0

21

pap1-D

0

0

0

0

0

0

0

0

0

0

19

0

0

2

21

PhyB

1

0

0

0

0

0

0

0

0

0

1

19

0

0

21

tt2

1

0

0

0

0

0

0

0

0

0

1

0

19

0

21

ugt78d2

0

1

0

0

0

1

0

0

0

0

2

4

0

13

21

Total

26

33

21

20

9

18

21

21

14

17

28

28

23

15

294

  1. The discriminant functions were determined using the first five discriminant components determined by PLS-DA analyses (5 data). In cross-validation, each case is classified by the functions derived from all other cases; 100% of original grouped cases, while 80.61% of cross validated grouped cases were correctly classified.