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Figure 1 | Plant Methods

Figure 1

From: ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions

Figure 1

CSAR analysis workflow. (A) Typical analysis workflow using CSAR. (B) Mapped reads (continuous line) are virtually extended (dashed line) for each strand directionally. Number of extended reads that overlap each nucleotide position is counted for both strands independently, and the minimum value for both strands is taken as "number of hits". (C) Consequently, regions with duplicated reads mapping to only one strand will not be considered significant. (D) CSAR output can be visualized in a typical genome browser.

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Plant Methods

ISSN: 1746-4811