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Figure 3 | Plant Methods

Figure 3

From: Protocol: a simple gel-free method for SNP genotyping using allele-specific primers in rice and other plant species

Figure 3

An example of multi-locus SNP genotyping. Graphical genotypes of 11 lines arranged in a neighbor-joining tree created on the basis of the 96-SNPs genotype. Numbers on branches represent bootstrap values with 1,000 replicates. The bars shown in red, blue and yellow on chromosomes represent homozygous 'Koshihikari' alleles, homozygous 'Kasalath' alleles and heterozygous alleles, respectively, while black bars indicate marker that could not be determined. Chromosome numbers shown in identical color in different plant lines indicate chromosomes sharing the same SNP pattern.

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Plant Methods

ISSN: 1746-4811