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Table 1 Top tables produced by SSHscreen for the forward and reverse cowpea libraries

From: SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea

Forward library top table: up/down regulation

ID

logFC(ER3)*

AveExpr

t

P.Value

adj.P.Val

B

invER2

46D03-F

2.91

10.89

34.37

5.4E-12

1.1E-08

19.51

-2.77

25B07-F

3.09

11.13

31.07

1.5E-11

1.6E-08

19.04

-3.06

13C10-F

2.71

10.62

29.27

2.8E-11

1.9E-08

18.73

-2.75

07E11-F

2.86

10.18

26.11

9.0E-11

3.2E-08

18.10

-2.84

13B02-F

2.77

10.59

25.71

1.1E-10

3.2E-08

18.01

-2.76

07E08-F

2.67

8.97

25.70

1.1E-10

3.2E-08

18.00

-2.51

26F04-F

2.98

11.46

25.60

1.1E-10

3.2E-08

17.98

-3.11

25A05-F

2.94

10.82

25.26

1.3E-10

3.2E-08

17.90

-2.81

25B08-F

2.86

11.25

24.99

1.4E-10

3.2E-08

17.83

-2.80

13C01-F

2.73

10.41

24.74

1.6E-10

3.2E-08

17.77

-2.77

05E09-F

2.58

10.86

23.98

2.1E-10

4.0E-08

17.58

-2.27

25C06-F

2.92

11.08

23.75

2.4E-10

4.0E-08

17.52

-2.92

25B06-F

3.60

11.17

22.99

3.3E-10

5.2E-08

17.31

-3.31

13F02-F

2.61

10.99

22.68

3.8E-10

5.2E-08

17.22

-2.84

13A08-F

2.65

10.84

22.54

4.0E-10

5.2E-08

17.18

-2.82

13C12-F

2.93

11.03

22.53

4.0E-10

5.2E-08

17.17

-2.89

33A07-F

3.32

10.42

22.27

4.5E-10

5.3E-08

17.10

-3.11

33C06-F

3.23

10.61

22.21

4.7E-10

5.3E-08

17.08

-3.22

06H12-F

2.41

10.54

21.83

5.5E-10

5.8E-08

16.96

-2.65

08B07-F

1.88

10.01

21.76

5.7E-10

5.8E-08

16.94

-2.40

Reverse library top table: up/down regulation

ID

logFC(ER3)#

AveExpr

t

P.Value

adj.P.Val

B

invER2

45C07-R

2.36

11.01

26.14

2.9E-10

5.5E-07

13.66

-1.35

36E04-R

2.25

10.81

22.19

1.4E-09

7.4E-07

13.20

-1.38

36B11-R

2.33

11.31

21.49

1.9E-09

7.4E-07

13.10

-1.22

44C07-R

2.39

11.69

20.93

2.4E-09

7.4E-07

13.02

-1.42

37B05-R

2.33

10.99

20.55

2.8E-09

7.4E-07

12.96

-1.07

45B02-R

2.26

11.05

20.32

3.2E-09

7.4E-07

12.92

-1.20

35F03-R

2.28

11.24

20.11

3.5E-09

7.4E-07

12.88

-1.41

35H05-R

2.35

11.22

20.08

3.5E-09

7.4E-07

12.88

-1.23

35E05-R

2.10

10.79

19.99

3.7E-09

7.4E-07

12.86

-1.02

45E02-R

2.29

10.88

19.88

3.9E-09

7.4E-07

12.84

-1.19

45G05-R

2.18

10.27

19.26

5.2E-09

9.0E-07

12.73

-1.24

35H04-R

2.24

11.22

18.85

6.4E-09

1.0E-06

12.65

-1.29

36A03-R

2.02

10.15

18.21

8.8E-09

1.3E-06

12.51

-1.22

16D06-R

1.65

11.02

17.88

1.1E-08

1.4E-06

12.44

-1.28

16C10-R

1.98

11.01

16.74

1.9E-08

2.3E-06

12.17

-1.20

35A01-R

2.19

10.92

16.73

2.0E-08

2.3E-06

12.16

-1.27

23G10-R

1.74

10.59

16.68

2.0E-08

2.3E-06

12.15

-1.08

45C04-R

2.17

10.50

16.11

2.8E-08

2.9E-06

12.00

-1.34

37C11-R

1.99

11.20

16.06

2.9E-08

2.9E-06

11.98

-1.08

16D05-R

2.09

11.12

15.85

3.2E-08

3.1E-06

11.92

-1.01

  1. Only the top 20 statistically significant up- and down-regulated genes (before sequencing) are shown (sorted by B statistic).
  2. *ER3 for Forward library calculated as log2(UT/UC)
  3. #ER3 for Reverse library calculated as log2(UC/UT)