Skip to main content

Advertisement

Table 1 Top tables produced by SSHscreen for the forward and reverse cowpea libraries

From: SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea

Forward library top table: up/down regulation
ID logFC(ER3)* AveExpr t P.Value adj.P.Val B invER2
46D03-F 2.91 10.89 34.37 5.4E-12 1.1E-08 19.51 -2.77
25B07-F 3.09 11.13 31.07 1.5E-11 1.6E-08 19.04 -3.06
13C10-F 2.71 10.62 29.27 2.8E-11 1.9E-08 18.73 -2.75
07E11-F 2.86 10.18 26.11 9.0E-11 3.2E-08 18.10 -2.84
13B02-F 2.77 10.59 25.71 1.1E-10 3.2E-08 18.01 -2.76
07E08-F 2.67 8.97 25.70 1.1E-10 3.2E-08 18.00 -2.51
26F04-F 2.98 11.46 25.60 1.1E-10 3.2E-08 17.98 -3.11
25A05-F 2.94 10.82 25.26 1.3E-10 3.2E-08 17.90 -2.81
25B08-F 2.86 11.25 24.99 1.4E-10 3.2E-08 17.83 -2.80
13C01-F 2.73 10.41 24.74 1.6E-10 3.2E-08 17.77 -2.77
05E09-F 2.58 10.86 23.98 2.1E-10 4.0E-08 17.58 -2.27
25C06-F 2.92 11.08 23.75 2.4E-10 4.0E-08 17.52 -2.92
25B06-F 3.60 11.17 22.99 3.3E-10 5.2E-08 17.31 -3.31
13F02-F 2.61 10.99 22.68 3.8E-10 5.2E-08 17.22 -2.84
13A08-F 2.65 10.84 22.54 4.0E-10 5.2E-08 17.18 -2.82
13C12-F 2.93 11.03 22.53 4.0E-10 5.2E-08 17.17 -2.89
33A07-F 3.32 10.42 22.27 4.5E-10 5.3E-08 17.10 -3.11
33C06-F 3.23 10.61 22.21 4.7E-10 5.3E-08 17.08 -3.22
06H12-F 2.41 10.54 21.83 5.5E-10 5.8E-08 16.96 -2.65
08B07-F 1.88 10.01 21.76 5.7E-10 5.8E-08 16.94 -2.40
Reverse library top table: up/down regulation
ID logFC(ER3)# AveExpr t P.Value adj.P.Val B invER2
45C07-R 2.36 11.01 26.14 2.9E-10 5.5E-07 13.66 -1.35
36E04-R 2.25 10.81 22.19 1.4E-09 7.4E-07 13.20 -1.38
36B11-R 2.33 11.31 21.49 1.9E-09 7.4E-07 13.10 -1.22
44C07-R 2.39 11.69 20.93 2.4E-09 7.4E-07 13.02 -1.42
37B05-R 2.33 10.99 20.55 2.8E-09 7.4E-07 12.96 -1.07
45B02-R 2.26 11.05 20.32 3.2E-09 7.4E-07 12.92 -1.20
35F03-R 2.28 11.24 20.11 3.5E-09 7.4E-07 12.88 -1.41
35H05-R 2.35 11.22 20.08 3.5E-09 7.4E-07 12.88 -1.23
35E05-R 2.10 10.79 19.99 3.7E-09 7.4E-07 12.86 -1.02
45E02-R 2.29 10.88 19.88 3.9E-09 7.4E-07 12.84 -1.19
45G05-R 2.18 10.27 19.26 5.2E-09 9.0E-07 12.73 -1.24
35H04-R 2.24 11.22 18.85 6.4E-09 1.0E-06 12.65 -1.29
36A03-R 2.02 10.15 18.21 8.8E-09 1.3E-06 12.51 -1.22
16D06-R 1.65 11.02 17.88 1.1E-08 1.4E-06 12.44 -1.28
16C10-R 1.98 11.01 16.74 1.9E-08 2.3E-06 12.17 -1.20
35A01-R 2.19 10.92 16.73 2.0E-08 2.3E-06 12.16 -1.27
23G10-R 1.74 10.59 16.68 2.0E-08 2.3E-06 12.15 -1.08
45C04-R 2.17 10.50 16.11 2.8E-08 2.9E-06 12.00 -1.34
37C11-R 1.99 11.20 16.06 2.9E-08 2.9E-06 11.98 -1.08
16D05-R 2.09 11.12 15.85 3.2E-08 3.1E-06 11.92 -1.01
  1. Only the top 20 statistically significant up- and down-regulated genes (before sequencing) are shown (sorted by B statistic).
  2. *ER3 for Forward library calculated as log2(UT/UC)
  3. #ER3 for Reverse library calculated as log2(UC/UT)