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Table 2 DAWGPAWS scripts for conversion of annotation results from native program output to GFF.

From: The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes

Annotation Program Result Type DAWGPAWS Script
FGENESH [50, 51] Gene ab initio cnv_fgenesh2gff.pl
GeneMark.hmm [43] Gene ab initio cnv_genemark2gff.pl
Find_LTR [45] TE ab initio cnv_findltr2gff.pl
LTR_FINDER [21] TE ab initio cnv_ltrfinder2gff.pl
LTR_seq [46] TE ab initio cnv_ltrseq2gff.pl
LTR_STRUC [20] TE ab initio cnv_ltrstruc2gff.pl
RepSeek [52] TE ab initio cnv_repseek2gff.pl
NCBI-BLAST [49] TE and gene homology cnv_blast2gff.pl
RepeatMasker [22] TE homology cnv_repmask2gff.pl
TEnest [24] TE homology cnv_tenest2gff.pl