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Table 2 Summary of SSR distribution from white clover SSR-enriched libraries

From: Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner

Library

No. of

sequences

No. of

sequences

with SSRsa

Percentage of

sequence with

SSRs

No. of

SSRs

Most frequent core

motifs

Motif

length

(bp)

No. of

repeat

Most frequent

repeats- No. &

(percentage)

(CA)17

826

191

23%

260

TG, CA, AC, GT

2–10

2–31

Di- 90 (35%)

        

Hexa- 68 (26%)

(ATG)12

876

230

26%

318

GAT, TGA, CAT, ATC

2–10

2–34

Tri- 138 (43%)

        

Hexa- 118 (37%)

Assembled

1,698

419

25%

575

GAT, TGA, TG, CA

2–10

2–34

Hexa- 186 (32%)

        

Tri- 159 (28%)

        

Di- 92 (16%)

  1. a Number of both perfect and imperfect SSRs, with a minimal length of 18 bp.
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Plant Methods

ISSN: 1746-4811