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Figure 2 | Plant Methods

Figure 2

From: ModuleFinder and CoReg: alternative tools for linking gene expression modules with promoter sequences motifs to uncover gene regulation mechanisms in plants

Figure 2

An overview of the operation of ModuleFinder. A) Flow diagram of ModuleFinder. Sets of expression data are taken as input, subsets of genes and experiments are hierarchically clustered and then experiments with similar expression profiles are added consecutively (indicated with an asterisk), expression data and TreeView cluster files are saved after each addition and the entire run is documented in a PDF file. B) The PDF output file includes a heatmap, clustering tree and functional breakdown of the modules at each stage of the run.

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Plant Methods

ISSN: 1746-4811