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Figure 6 | Plant Methods

Figure 6

From: A flexible representation of omic knowledge for thorough analysis of microarray data

Figure 6

Visualization of the relationship between the area of 22,680,001–22,710,000 bp in chromosome 5 and the gene expression profile which moderately increases transcription. The array probe and the array data correspond to the section of every 30,000 bp and the array probe, respectively and then sections are ranked. The middle left display is the first principal ingredient set to 11 and clustered by BL-SOM in OSML Editor. (Graph View) In the upper right display the Arabidopsis_genome.xml is displayed by "Functional Class View" in OSML Editor. The rectangular frame indicates the classification of every 3,000,000 bp, every 300,000 bp, and every 30,000 bp. The display at the bottom provides details on the ranking results (Ranking View) of clustering from the data in the upper left display (clustering ID 5-0). "Chr: 5_15390001-15420000 bp" is in second place. Five probes out of six are included in cluster 5-0.

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