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Table 3 The 3' eight mRNA specific bases for the 5' primer set for Multiplex DD [15].

From: Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants

ID Sequence ID Sequence ID Sequence ID Sequence
1 TACTCCCT 37 CAAAGGAC 73 TCTTGGGT 109 CCAAGAGT
2 ATCTCCGA 38 GATAGGAG 74 ACATGGAC 110 GCTAGAAC
3 TCTTCCGA 39 CAAAGGAG 75 CAATGGAG 111 ACCAGAAC
4 TCATCCGA 40 TCTAGGAG 76 CTTTGGTC 112 AGCAGAAC
5 AGATCCGA 41 AAGAGGTC 77 AGTTGGTC 113 GAGAGAAG
6 GATTCCGT 42 CAAAGGTC 78 AAGTGGTG 114 CAGAGAAG
7 ATGTCCGT 43 AGAAGGTC 79 GAATGGTG 115 GGAAGAAG
8 AACTCCGT 44 AAGAGGTG 80 AACTGGTG 116 GTGAGATC
9 GAATCCAC 45 ACAAGGTG 81 AGTTGGTG 117 CTCAGATC
10 TTCTCCAC 46 AAGAGCCA 82 AAGCACCA 118 ACCAGATC
11 ATCTCCAC 47 CAAAGCCA 83 TTCCACCA 119 GCAAGATG
12 GTTTCCAG 48 ATCAGCCA 84 CATCACCA 120 GTCCATCA
13 ATCTCCAG 49 AGTAGCCA 85 AACCACCT 121 GAGCATCT
14 AAGTCCTC 50 TTCAGCCT 86 CTTCACCT 122 GCTCATCT
15 GATTCCTC 51 CTTAGCCT 87 TCTCACCT 123 GCTCATGT
16 ATGTCCTC 52 ACAAGCCT 88 CAACACGA 124 AGCCATGT
17 GTTTCCTC 53 AAGAGCGA 89 CTTCACGA 125 GACCATAC
18 AACTCCTC 54 TACAGCGA 90 ACACACGA 126 CTCCATAC
19 AGATCCTC 55 TTCAGCAC 91 CTTCACGT 127 CACCATTC
20 TTCTCCTG 56 ATCAGCAG 92 GAACACAC 128 GCTCATTG
21 AACTCCTG 57 TACAGCAG 93 GTTCACAG 129 CTCCATTG
22 ATCAGGCA 58 AGAAGCAG 94 CTTCACTC 130 GAGAGTCA
23 AAGAGGCT 59 AAGAGCTC 95 CTTCACTG 131 CCAAGTCT
24 ATGAGGCT 60 ATGAGCTC 96 CCTACACT 132 GTCAGTCT
25 CAAAGGCT 61 ATCAGCTC 97 CCAACAGA 133 GAGAGTGT
26 TTGAGGCT 62 TTGAGCTC 98 TGGACAGT 134 GTGAGTGT
27 TCTAGGCT 63 ACAAGCTC 99 CTCACAAC 135 CTCAGTAC
28 TCAAGGCT 64 TCAAGCTG 100 GTCACAAC 136 GGTAGTTC
29 AGAAGGCT 65 CATAGCTG 101 GGAACATC 137 CTGAGTTC
30 ATGAGGGA 66 CTTTGGCA 102 CACACATC 138 GTCAGTTC
31 TCAAGGGA 67 AGATGGCA 103 GTGACATG 139 GCTAGTTG
32 AAGAGGGT 68 GAATGGCT 104 CCAAGACA 140 CTCAGTTG
33 ATGAGGGT 69 TCATGGCT 105 ACCAGACT 141 TCCAGTTG
34 TTCAGGGT 70 AGATGGCT 106 GGAAGAGA 142 AGCAGTTG
35 TCTAGGGT 71 AGTTGGCT 107 GGTAGAGA   
36 GATAGGAC 72 CAATGGGT 108 CAGAGAGT