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Table 3 The 3' eight mRNA specific bases for the 5' primer set for Multiplex DD [15].

From: Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants

ID

Sequence

ID

Sequence

ID

Sequence

ID

Sequence

1

TACTCCCT

37

CAAAGGAC

73

TCTTGGGT

109

CCAAGAGT

2

ATCTCCGA

38

GATAGGAG

74

ACATGGAC

110

GCTAGAAC

3

TCTTCCGA

39

CAAAGGAG

75

CAATGGAG

111

ACCAGAAC

4

TCATCCGA

40

TCTAGGAG

76

CTTTGGTC

112

AGCAGAAC

5

AGATCCGA

41

AAGAGGTC

77

AGTTGGTC

113

GAGAGAAG

6

GATTCCGT

42

CAAAGGTC

78

AAGTGGTG

114

CAGAGAAG

7

ATGTCCGT

43

AGAAGGTC

79

GAATGGTG

115

GGAAGAAG

8

AACTCCGT

44

AAGAGGTG

80

AACTGGTG

116

GTGAGATC

9

GAATCCAC

45

ACAAGGTG

81

AGTTGGTG

117

CTCAGATC

10

TTCTCCAC

46

AAGAGCCA

82

AAGCACCA

118

ACCAGATC

11

ATCTCCAC

47

CAAAGCCA

83

TTCCACCA

119

GCAAGATG

12

GTTTCCAG

48

ATCAGCCA

84

CATCACCA

120

GTCCATCA

13

ATCTCCAG

49

AGTAGCCA

85

AACCACCT

121

GAGCATCT

14

AAGTCCTC

50

TTCAGCCT

86

CTTCACCT

122

GCTCATCT

15

GATTCCTC

51

CTTAGCCT

87

TCTCACCT

123

GCTCATGT

16

ATGTCCTC

52

ACAAGCCT

88

CAACACGA

124

AGCCATGT

17

GTTTCCTC

53

AAGAGCGA

89

CTTCACGA

125

GACCATAC

18

AACTCCTC

54

TACAGCGA

90

ACACACGA

126

CTCCATAC

19

AGATCCTC

55

TTCAGCAC

91

CTTCACGT

127

CACCATTC

20

TTCTCCTG

56

ATCAGCAG

92

GAACACAC

128

GCTCATTG

21

AACTCCTG

57

TACAGCAG

93

GTTCACAG

129

CTCCATTG

22

ATCAGGCA

58

AGAAGCAG

94

CTTCACTC

130

GAGAGTCA

23

AAGAGGCT

59

AAGAGCTC

95

CTTCACTG

131

CCAAGTCT

24

ATGAGGCT

60

ATGAGCTC

96

CCTACACT

132

GTCAGTCT

25

CAAAGGCT

61

ATCAGCTC

97

CCAACAGA

133

GAGAGTGT

26

TTGAGGCT

62

TTGAGCTC

98

TGGACAGT

134

GTGAGTGT

27

TCTAGGCT

63

ACAAGCTC

99

CTCACAAC

135

CTCAGTAC

28

TCAAGGCT

64

TCAAGCTG

100

GTCACAAC

136

GGTAGTTC

29

AGAAGGCT

65

CATAGCTG

101

GGAACATC

137

CTGAGTTC

30

ATGAGGGA

66

CTTTGGCA

102

CACACATC

138

GTCAGTTC

31

TCAAGGGA

67

AGATGGCA

103

GTGACATG

139

GCTAGTTG

32

AAGAGGGT

68

GAATGGCT

104

CCAAGACA

140

CTCAGTTG

33

ATGAGGGT

69

TCATGGCT

105

ACCAGACT

141

TCCAGTTG

34

TTCAGGGT

70

AGATGGCT

106

GGAAGAGA

142

AGCAGTTG

35

TCTAGGGT

71

AGTTGGCT

107

GGTAGAGA

  

36

GATAGGAC

72

CAATGGGT

108

CAGAGAGT